yhgD [2018-09-13 16:45:46]

similar to transcriptional regulator ([SW|TetR family])

locus: BSU10150

pI: 7.24

mw: 21.65 kDa

protein length: 191 aa

gene length: 573 bp

function: unknown

product: unknown

essential: no

synonyms: yixD

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 1,089,755 → 1,090,330

The protein

Protein family

• [SW|TetR family]

Structure

• [PDB|5K7F] (from Myxococcus xanthus, 24% identity) [pubmed|27940564]

Expression and Regulation

Operons

• genes: [gene|591C37CE3A583ADFC3006A8D1C9D07FA4F8F624C|yhgD]-[gene|8CA084B7BAA4969534DFEFBAFE31D25125354630|yhgE]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-B504 (yhgD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1503 NBRP B. subtilis, Japan]
• BKE10150 (Δ[gene|591C37CE3A583ADFC3006A8D1C9D07FA4F8F624C|yhgD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE10150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTATTCACCTCGAAAC, downstream forward: _UP4_TAGATAATCCTTTCTCTTTG
• BKK10150 (Δ[gene|591C37CE3A583ADFC3006A8D1C9D07FA4F8F624C|yhgD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK10150 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTATTCACCTCGAAAC, downstream forward: _UP4_TAGATAATCCTTTCTCTTTG

References

Reviews

• 24006471

Research papers

• 27940564